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Dear FS experts,
We are currently exploring the Infant Freesurfer pipeline for surface based analysis in our cohort. The generated surfaces seem reasonable, but now we are wondering, how to proceed. To our understanding, by looking at the recon-all for adult data, the next step would be to register each subject to standard space (using the -qcache flag this happens directly to fsaverage). Since the -qcache flag is not available in infant_recon_all we would like to clarify if this is not advised to do so with subjects processed via infant_recon_all or if we could just proceed with recon_all from here. Is there is any alternative procedure that should be followed in order to map all subjects into one space, e.g. creating a cohort specific average?
Kind regards,
Céline