Use --annotation aparc.a2009s Run it with --help to see all the options. doug
On 08/06/2013 08:24 AM, Linn Mittlestein wrote:
Hi all,
I bit confused about how to create labels from annotation2label command to create DLPFC. I want make DLPFC label by merging G_frontal_middle.label, S_frontal_inferior.label and S_frontal_middle.label (available in the 2009 atlas). But I only can get annotation2label to work with the other atlas; eg using this command:
mri_annotation2label --subject $subject --hemi rh --outdir ./$subject/label
But I would like 2009 atlas so for example
mri_annotation2label --a2009s --subject $subject --hemi rh --outdir ./subject/label
But this flag doesnt seem to work. Any other suggestions to get the label files (so i can then do mri_mergelabels and Mris_anatomical stats would be very appreciated, I dont think I need use tksurfer, I think mri_annotation2label should work somehow?
Kind Wishes,
Linn
/
/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer