7 May
2021
7 May
'21
6:48 a.m.
External Email - Use Caution
Hello, I am trying to use SAMSEG to segment white matter lesions, I ran the following command:
run_samseg --input '/home/neuroimage/fsl/vascular/1002/U1002_3DT1.nii' '/home/neuroimage/fsl/vascular/1002/flair_reg.nii' --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output '/home/neuroimage/fsl/vascular/1002/'
The output files were:
- cost.txt - priors-testing.mgz - samseg.talairach.lta - template.lta - template_coregistered.mgz - template_transforms.mat
However I don't find any file with the white matter lesions segmented or a stat file. I would send you the terminal outputs but is too extensive. Would you help me?