Dear FreeSurfer, During mri_convert, I get the following warning, and then an error during mri_em_register in -autorecon2. Would greatly appreciate any help, Thanks, Sasha
WARNING ==================++++++++++++++++++++++++======================================= The physical sizes are (307.20 mm, 307.20 mm, 186.00 mm), which cannot fit in 256^3 mm^3 volume. The resulting volume will have 308 slices. The freesurfer tools should be able to handle more than 256 slices. If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu). ==========================
#@# EM Registration Fri Apr 7 15:08:40 EDT 2006 /data/subjects/2154/mri
mri_em_register -mask brainmask.mgz nu.mgz /freesurfer/average/RB_all_2006-02-15.gca transforms/talairach.lta
using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading '/freesurfer/average/RB_all_2006-02-15.gca'... setting gca type = Normal gca type average std = 7.4 using min determinant for regularization = 5.5 0 singular and 1662 ill-conditioned covariance matrices regularized reading 'nu.mgz'... Segmentation fault Linux localhost.localdomain 2.6.9-22.0.2.ELsmp #1 SMP Tue Jan 17 06:12:06 CST 2006 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Fri Apr 7 15:08:49 EDT 2006
Disclaimer: The materials in this e-mail are private and may contain Protected Health Information. Please note that e-mail is not necessarily confidential or secure. Your use of e-mail constitutes your acknowledgment of these confidentiality and security limitations. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution, or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this e-mail in error, please immediately notify the sender via telephone or return e-mail.