Hi Christine, Bruce is the best person to answer this but he may be out of email contact for a few more days. I think that it is probably ok, as long as your final images have a T1 contrast.
doug
Christine Ecker wrote:
Hi, We use quantitative T1/T2 mapping to generate a variety of synthetic images e.g. synthetic SPGRs/T1-weighted images. I was wondering whether Freesurfer analysis can be applied to such synthetic images and whether there is anything I need to change in the recon-all processing stream in order to make it work. Thanks, Christine
Dr. Christine Ecker Section of Brain Maturation (PO50) Department of Psychological Medicine De Crespigny Park, Denmark Hill London SE5 8AF
Phone: 0207 848 0947 Email: c.ecker@iop.kcl.ac.uk
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