if you move the mouse around do you seen any non-zero values in the "mouse" side of the info windows at the bottom? Are the voxel coords reasonable?
If you upload the volume we'll take a look.
On Thu, 4 Feb 2016, Worker, Amanda wrote:
Hi,
Changing the min and max fields doesn't make it visible, however changing the color map to Lookup Table makes the volume all red. But I can't seem to do much else.
Amanda
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of dgw dgwakeman@gmail.com Sent: 04 February 2016 12:17 To: Freesurfer support list Subject: Re: [Freesurfer] Viewing nifti file in freeview Amanda,
Is there a progress bar still running? Have you tried changing the window min max fields?
hth d
Sent from my Phone
On Feb 4, 2016, at 06:46, Worker, Amanda amanda.worker@kcl.ac.uk wrote:
Hi All, I was hoping someone could help with an issue that I'm having that I'm sure has a simple explanation. I have a proton density map in nifti format that I am trying to convert to mgz using mri_convert. However, when I load the original nifti file into freeview, I get a blank screen and the same when I try to load the converted .mgz - but I have no issue with loading this file into fslview. Other nifti and .mgz files are also loading fine into freeview. Has anyone seen this problem before? Thanks, Amanda _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.