She wants to go from Caret to FreeSurfer, rather than from FreeSurfer to Caret, which is what I do.
Kara, I believe we are meeting tomorrow to discuss the options for this?
I don't know anything about the FreeSurfer longitudinal pipeline, but it would take going through the pipeline and finding all of the inputs needed and converting them or generating them. I think the main goal here is to use the longitudinal surface registration.
Matt.
On 3/14/13 8:04 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Kara
I think the answer is yes as there are people at Wash U that do this routinely. Maybe Matt Glasser or someone else can chime in?
cheers Bruce
On Thu, 14 Mar 2013, Ellspermann, Kara wrote:
I am new to Freesurfer, and I am trying to input/process preterm infant brain data (ultimately attempting longitudinal registration). I already have surfaces generated from Caret, as well as the original T1/T2 images. My question is: Does anything exist to take processed data from Caret into Freesurfer? If not, is there a good way to process the T1/T2 images in Freesurfer despite the differences in contrast and intensity (and anatomy)?
Thank you in advance for your advice, Kara
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