Yes I don't think that is it because it processes some of the files. Not sure though.
I did try the mri_convert command but I'd have to run it hundreds or times unless there is some way to make it loop through all the files in the different folders.
On Saturday, December 5, 2015, Douglas Greve greve@nmr.mgh.harvard.edu wrote:
Did you see the question "has this file been anonymized?" ?
On 12/5/15 10:04 AM, Marc Callison wrote:
Good day,
I'm getting the following error when I try to convert my DICOM files. Some of the files do not have the issue, but others do. The error is below.
WARNING: file /Users/marc/Desktop/brainscan/DICOM/PA000000/ST000000/SE000001/IM000000 does not contain a Siemens ASCII header
has this file been anonymized?
ERROR: cannot unpack mosiacs without ASCII header
Darwin Marcs-MacBook-Air.local 15.0.0 Darwin Kernel Version 15.0.0: Sat Sep 19 15:53:46 PDT 2015; root:xnu-3247.10.11~1/RELEASE_X86_64 x86_64
recon-all -s my_brain exited with ERRORS at Fri Dec 4 20:02:27 CST 2015
For more details, see the log file /Applications/freesurfer/subjects/my_brain/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
I need help figuring out how to solve this if anyone can. I'd really appreciate it.
Thanks,
Marc
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