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Hello,
During recon-all I keep running into the same error for one of my subjects.
#@# Make White Surf rh Fri Mar 22 00:57:11 EDT 2019
/Volumes/DANIEL/freesurfer/Rest.AES118/scripts
\n mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs Rest.AES118 rh \n
using white.preaparc as white matter name...
only generating white matter surface
using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
not using aparc to prevent surfaces crossing the midline
INFO: assuming MGZ format for volumes.
using brain.finalsurfs as T1 volume...
$Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
$Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
reading volume /Volumes/DANIEL/freesurfer/Rest.AES118/mri/filled.mgz...
reading volume /Volumes/DANIEL/freesurfer/Rest.AES118/mri/brain.finalsurfs.mgz...
reading volume /Volumes/DANIEL/freesurfer/Rest.AES118/mri/../mri/aseg.presurf.mgz...
reading volume /Volumes/DANIEL/freesurfer/Rest.AES118/mri/wm.mgz...
25155 bright wm thresholded.
1843 bright non-wm voxels segmented.
reading original surface position from /Volumes/DANIEL/freesurfer/Rest.AES118/surf/rh.orig...
mris_make_surfaces: could not read surface file /Volumes/DANIEL/freesurfer/Rest.AES118/surf/rh.orig
ERROR: reading /Volumes/DANIEL/freesurfer/Rest.AES118/surf/rh.orig
Read 0 bytes, expected 1
Argument list too long
Darwin hlhp-105.umd.edu 16.7.0 Darwin Kernel Version 16.7.0: Wed Oct 10 20:06:00 PDT 2018; root:xnu-3789.73.24~1/RELEASE_X86_64 x86_64
recon-all -s Rest.AES118 exited with ERRORS at Fri Mar 22 00:57:16 EDT 2019
For more details, see the log file /Volumes/DANIEL/freesurfer/Rest.AES118/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Thanks for any help you can provide with debugging!
*Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2442@gmail.com ddcc2442@gmail.com* 443-254-6298