did you check the talairach transform? On Wed, 12 Jun 2013, Sudhin A. Shah wrote:
Hi, This is the error I get: ****************TEMPLATE DEFORMATION****************
second estimation of the COG coord: x=127,y=96, z=161, r=9988 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^
GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=6 , nb = 42408 RIGHT_CER CSF_MIN=1, CSF_intensity=17, CSF_MAX=27 , nb = 1512 LEFT_CER CSF_MIN=0, CSF_intensity=6, CSF_MAX=20 , nb = 2142 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=3, CSF_MAX=29 , nb = 17010 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=5 , nb = 15750 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=5 , nb = 5994 mri_watershed Error: GLOBAL region of the brain empty !
Please find attached a screenshot of the MRI
Please advice, S