Dear Alex, As explained in the wiki, if you run the module on a FreeSurfer processed subject, the output will be in the subject’s mri directory, and will be called: hypothalamic_subunits_seg.v1.mgz So you could run something like: cd $SUBJECTS_DIR/<SUBJECT_NAME>/mri freeview nu.mgz hypothalamic_subunits_seg.v1.mgz
If you ran the module on a raw t1 scan, then the output will be wherever you specified with the flag -o
Kind regards,
Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Lab of Autism and Developmental Neuroscience, Lab of Autism and Developmental Neuroscience" ladn@email.gwu.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, March 16, 2021 at 23:22 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hypothalamus segmentation output
External Email - Use Caution Dear Freesurfer experts,
Hope that you all are well and stay safe.
I would like some help figuring out the code to open the output for the hypothalamus segmentation (via freeview). Does anyone have this info? I didn't find it on the website.
Thank you so much!
All the best, Alex