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Hi Bruce!
You are right! The problem is solved by raising the memory capacity.
Next time someone else asks you to solve the mri_ca_label problem, tell them to increase their machine memory!
thank you very much.
Kyul
-----Original Message----- From: "Bruce Fischl"fischl@nmr.mgh.harvard.edu To: "Freesurfer support list"freesurfer@nmr.mgh.harvard.edu; Cc: Sent: 2018-07-15 (일) 01:10:28 Subject: Re: [Freesurfer] recon-all error: I think mri_ca_label problem...
Hi Kyul
I'm pretty sure you ran out of memory. We typically recommend 8G of RAM:
https://surfer.nmr.mgh.harvard.edu/fswiki/SystemRequirements
I you look in your recon-all.log file it shows total and free memory:
total used free shared buffers cached Mem: 2027764 1203512 824252 3716 148744 502072 -/+ buffers/cache: 552696 1475068 Swap: 1048572 714068 334504
(this is the output of the unix command /usr/bin/free)
You have only 2G in the machine, but more than half of it is in use when recon-all starts executing. You might be able to get away with 2G if most of it was free, but I don't think things will run in 800MB
cheers Bruce
On Sat, 14 Jul 2018, 김결 wrote:
External Email - Use CautionHello FreeSurfer Developers,
I'm attempting to recon-all function (input file is sample-001.nii.gz), but for some of my subjects I get the following error when I run the recon-all command:
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0
Platform: Docker freesurfer/freesurfer tag 6.0 (maybe officialized
recon-all.log: see attached
recon-all.error.log see attached
recon-all-status see attached
please help me...
Kyul
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