Hi,
I'm sorry for what seems like a trivial question. I couldn't find this answer in the tutorials or old archive.
I have statistical data in the surface that I have thresholded and binarized to form a mask. I can load the mask as an overlay in tksurfer. My understanding is that you need to turn files into labels in order to change the color display in tksurfer. Is there a command that takes in a shape/surface binary file and converts to labels? I came across this (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-March/017668.htm...) email from Doug, but it looks like I don't have mri_seg2annot in this freesurfer release.
More broadly, I would like to tksurfer to display several masks at once, in different colors, using the command line. My understanding is that I would then use mris_label2annot to put all the labels together. When using this function, does the input order of the labels determine the number reference for the color in the Lookup table? What happens in the case where some labels overlap?
Thank you in advance, Rita