Thank you Michael for this link !
However, it seems that we have to install very precise versions of FSL and Freesurfer.
Once we get *fsl-5.0.6* package ( http://fsl.fmrib.ox.ac.uk/fsldownloads/oldversions/), how to install this one and which wiki to follow ?
Cheers,
------------------------------------- Matthieu Vanhoutte, MSc Research Engineer - Department of Neuroradiology Regional University Hospital, Lille, France
2014-09-19 16:35 GMT+02:00 Harms, Michael mharms@wustl.edu:
Hi, I suggest you start with the documentation that accompanies the recently released HCP pipelines. see http://www.humanconnectome.org/documentation/HCP-pipelines/ and the link therein to the pipelines on GitHub.
cheers, -MH
-- Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu
From: Matthieu Vanhoutte matthieuvanhoutte@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, September 19, 2014 9:23 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] HCP pipelines: fMRIVolume --> correction of gradient-nonlinearity-induced distortion
Dear Freesurfer's experts,I'm trying to follow fMRI Volume pipeline from "The minimal preprocessing pipelines for the Human Connectome Project" (NeuroImage, 2013) on HCP data.
The first step has to be the correction of gradient-nonlinearity-induced distortion. The correction is then done with a customized version of the gradient_nonlin_unwarp package available in FreeSurfer (Jovicich et al., 2006).
I couldn't manage to find this package on internet, the only things I've found is the freesurfer grad_unwarp command and a webpage ( https://surfer.nmr.mgh.harvard.edu/fswiki/GradientUnwarping) with no download link...
Where can I find this package and how to use it ?
Many thanks !
Best,
-------------------------------------Matthieu Vanhoutte, MSc Research Engineer - Department of Neuroradiology Regional University Hospital, Lille, France
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