The full name on my machine is: freesurfer-centos4_x86_64-v4.1.0
So I think the version is 4.1.0
Best, Xiaoying
2011/5/22 Bruce Fischl fischl@nmr.mgh.harvard.edu
No, it's not the same what version are you running?
On May 21, 2011, at 11:26 PM, Xiaoying Tang xtang7@jhu.edu wrote:
Hi Douglas,
Thanks a lot for your suggestion.
It is really strange that I don't find bbregister in the file foler of the freesurfer on my machine. But I find a program named "fslregister". Is that the same?
If they are different, is it that I need to update my version of freesurfer so that I can have the program bbregister?
Thanks a lot.
Best, Xiaoying
2011/5/21 Douglas Greve < greve@nmr.mgh.harvard.edu greve@nmr.mgh.harvard.edu>
If you have a T1 that you've run through FS and are happy with the skull strip, then you can register your T2 with the FS anatomical (with bbregister), then map the skull stripped T1 into the T2 space (mri_vol2vol), then apply it to the T2 (mri_mask).
doug
On 5/21/11 7:27 PM, Bruce Fischl wrote:
Hi Xiaoying,
unfortunately there isn't. I would recommend BET (from the FSL).
cheers Bruce On Sat, 21 May 2011, Xiaoying Tang wrote:
Hi All,
I am wondering whether there is any way to skull strip a T2 image using freesurfer. I tried to use the same way as for skullstripping T1 image,
but
always failed.
I would be most grateful if someone can give me some suggestion.
Best, Xiaoying Tang
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