Dear Freesurfers, I've installed Freesurfer 6.0 beta in a virtual machine, and run the -brainstem-structures option to recon-all.
The process stopped with an error: "ERROR: Option --DKTatlas40 unknown"
In the following, all the information: _____________________________________________ FREESURFER_HOME: /usr/local/freesurfer
Build stamp: freesurfer_Linux_centos6_x86_64-dev-20160229
RedHat release: CentOS release 6.7 (Final)
Kernel info: Linux 2.6.32-573.el6.x86_64 x86_64
______________________________________________
1) subject name is 11960 2) the command line is: recon-all -all -i /usr/local/freesurfer/input/11960_3D_lf.nii.gz -s 11960 -brainstem-structures 3) mri_aparc2aseg --s 11960 --volmask --aseg aseg.presurf.hypos --DKTatlas40
ERROR: Option --DKTatlas40 unknown Linux freesurfer-fabio 2.6.32-573.el6.x86_64 #1 SMP Thu Jul 23 15:44:03 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 11960 exited with ERRORS at Wed Mar 9 23:53:10 CET 2016
4) in attach the recon-all.log file
Thank you for your help
Claudia