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Dear Freesurfer developers, I have no previous experience in Freesufer and I am trying to go through the tutorial before analyzing my own data. I’m working on the dataset you shared on your website. I work on MacBook Pro Apple M2 Pro 32 GB Sonoma 14.2.1. My Freesurfer version is 8.0.0 beta. I set environmental variable FS_ALLOW_DEEP to 1 as suggested. The dataset was one from the tutorial. The directory name was practice_with_data/dicoms I ran recon-all command:
recon-all -all -i I49 -s Subj001
Freesurfer had worked for a time but eventually it came up with a message:
(0) INVALID_ARGUMENT: input must be 4-dimensional[1,72,72,72,24] [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]] [[unet/unet_bn_down_0/FusedBatchNormV3/_16]] (1) INVALID_ARGUMENT: input must be 4-dimensional[1,72,72,72,24] [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]] 0 successful operations. 0 derived errors ignored. [Op:__inference_predict_function_1146] ERROR: Darwin 192.168.1.14 23.2.0 Darwin Kernel Version 23.2.0: Wed Nov 15 21:55:06 PST 2023; root:xnu-10002.61.3~2/RELEASE_ARM64_T6020 arm64
recon-all -s Subj001 exited with ERRORS at Mon Nov 18 21:41:39 CET 2024
label, surf, tmp, touch and trash in Subj001 are empty. I checked the mailing list but I couldn’t find any hint.. Please find attached recon-all.log file.
I would be very grateful for your help!
Marcin Stański
Poznań University of Medical Science Department of General Radiology and Neuroradiology Poznań, Poland