Re: [Freesurfer] Outputting reformatted images in freesurfer

I think mri_vol2vol will do this. Check out the help, or the wiki.

Bruce On Sat, 1 Apr 2006, Salil Soman wrote:

Hi,

I have 2 images loaded into freesurfer (1 as an overlay) with the images transformed using a .reg file. Is there a way in freesurfer to output each of the loaded images in the pose they are in after loading the .reg file? (so the pose of each image is the result of whatever transforms are applied to the images by the .reg file) The end result I'm looking for is that is both images are loaded into freesurfer with a reg file that applies no transforms, the images will be the same as though the original .reg file was used.

Thanks,

Salil Soman sal@bwh.harvard.edu