Hi Stacey,
usually that means the partition is full. Can you check it with df?
cheers Bruce
On Sat, 22 May 2010, Stacey M Schaefer wrote:
Hello Freesurfer List Gurus,
We're at the stage of making white matter edits and adding control points, but one of my subjects recently produced the following error:
zcat: /study/midus/data/mri/processed/freesurfer/subject057/mri/wm.seg.mgz: unexpected end of file mghRead(/study/midus/data/mri/processed/freesurfer/subject057/mri/wm.seg.mgz): could not read 65536 bytes at slice 90 mri_segment: could not read file wm.seg.mgz to preserve edits Linux cashew.keck.waisman.wisc.edu 2.6.18-164.6.1.el5 #1 SMP Tue Nov 3 23:11:58 EST 2009 i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Tue May 18 21:04:35 CDT 2010
Any suggestions on how to fix? This subject has already had a great deal of hands on processing in terms of adding control points, editing the white matter, and running recon_all to fix, with multiple passes to get it as perfect as possible. Also, I've TRIED just rerunning recon-all on it, but the errors persist. (Each time, we're running the following command: recon-all -autorecon2-cp -autorecon3 -subjid subject057)
Any and all info on how to salvage this subject's data without have to start from scratch will be much appreciated!
Thank you. Stacey Schaefer
Stacey M. Schaefer, Ph.D. Waisman Laboratory for Brain Imaging and Behavior University of Wisconsin - Madison 1500 Highland Ave Rm T127 Madison, WI 53705 Waisman Phone: 608-263-9321 Laboratory for Affective Neuroscience UW Psychology Dept, Brogden 1202 W Johnson St Rm 392 Madison, WI 53706 Brogden Phone: 608-262-9937 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer