Hi Doug,
I am troubleshooting an fMRI measurement and would need to see the raw data time course. I have previously used sliceview-sess for this purpose, but for some reason I can no longer make it work. Well, sliceview-sess itself opens fine if I define the analysis and contrast names, but pushing "r" has no effect (should evoke raw data display), and the command line raw data request gives a vague error. I already analysed the data in both bhdr and nii formats, without improvement (a time point exclusion file was used during analysis). -v1 or -v2 makes no difference. Any suggestions would be much appreciated!
Bests,
Tommi
******************** on machine cuzco nmr-std-env (same problem with nmr-dev-env)
cd /space/cuzco/1/users/raij/avml_fmri_mctogether/avml14_session_BRISI12/ setenv SUBJECTS_DIR /space/cognito/5/users/raij/subjects_mri/ setenv SUBJECT avml14
[cuzco:avml14_session_BRISI12] (nmr-std-env) sliceview-sess -sf sessid -df sesspar -raw 011 -motioncor -------------------------------------------------------------- sliceview-sess logfile is /autofs/space/cuzco_001/users/raij/avml_fmri_mctogether/avml14_session_BRISI12/log/sliceview-sess.log -------------------------------------------------------------- INFO: no slice specified, assuming mosaic grep: /autofs/space/cuzco_001/users/raij/avml_fmri_mctogether/avml14_session_BRISI12/session.info: No such file or directory avml14_session_BRISI12 ---------------------------------------------- /autofs/space/cuzco_001/users/raij/avml_fmri_mctogether/avml14_session_BRISI12 yakview -i /autofs/space/cuzco_001/users/raij/avml_fmri_mctogether/avml14_session_BRISI12/bold/011/fmc -r /autofs/space/cuzco_001/users/raij/avml_fmri_mctogether/avml14_session_BRISI12/bold/011/fmc -sn mos -thmin 2 -thmax 7 -title avml14_session_BRISI12 -v1 -mgh ---------------------------------------------- yakview: $Id: yakview,v 1.11.2.1 2007/10/05 20:42:55 greve Exp $ ERROR: cannot find [cuzco:avml14_session_BRISI12] (nmr-std-env)
--- Tommi Raij, M.D., Ph.D. MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging Bldg 149, 13th St Charlestown, MA 02129 U.S.A.