External Email - Use Caution
Dear Freesurfer Developpers,
When I look at the FreeSurfer documentation on hippocampal segmentation, I see that it is possible to obtain different segmentations in addition to the 'traditionnal ' freesurfer 7 one: - HBT: the hippocampus is subdivided into head, body and tail. - FS60: it mimics the FreeSurfer 6.0 hippocampal module, i.e. there is no head/body subdivision for the hippocampus. no head/body subdivision for hippocampal sub-regions. - CA: the "internal" labels (GC-ML-DG and molecular layer) are absorbed by the CA subfields.
When I run the command line: segmentHA_T1.sh bert I get files: hipposubfields.lh.T1.v21.stats which contain the volumes of the freesurfer 7 segmentation but not the other segmentations. I would like to generate a .stat file (one/subject) of segmentation type 'CA' , how can I do this?
Thank you, Best,
Yasmine