cuda v8 freesurfer git download from today (v6?), gtx1080ti gpus, brief env recap:
999 cd /usr/local/freesurfer-gpu.git/ 1001 export PATH=/usr/local/cuda-8.0/bin:$PATH 1002 export LD_LIBRARY_PATH=/usr/local/cuda-8.0/lib64 1004 make clean 1008 ./setup_configure | tee -a setup_configure.log 1011 ./configure --disable-Werror --with-pkgs-dir=/usr/local/centos6-x86_64-packages --prefix=/usr/local/freesurfer-6.0.0 --with-cuda=/usr/local/cuda-8.0 | tee -a configure.log 1012 time make -j4 | tee -a make.log 1013 make install
[hmeij@n78 freesurfer-gpu.git]$ grep nvcc Makefile NVCC = /usr/local/cuda-8.0/bin/nvcc
Q1 what causes this and how to fix, make install fails /bin/install -c fs_spmreg.glnxa64 irepifitvol.glnx64 /usr/local/freesurfer-6.0.0/bin /bin/install: cannot stat â_spmreg.glnxa64âNo such file or directory /bin/install: cannot stat âepifitvol.glnx64âNo such file or directory make[2]: *** [install-data-local] Error 1 make[2]: Leaving directory `/usr/local/freesurfer-gpu.git/scripts' make[1]: *** [install-am] Error 2 make[1]: Leaving directory `/usr/local/freesurfer-gpu.git/scripts' make: *** [install-recursive] Error 1
Q2 no cuda packages, maybe related to Q1
[hmeij@n78 freesurfer-gpu.git]$ ls /usr/local/freesurfer-6.0.0/bin/*cuda* /usr/local/freesurfer-6.0.0/bin/cuda_setup
Thanks for any help. -Henk