what is in space/grouch/4/users/ponce/ponce_002d2/3danat/003? If they are dicoms try giving it one slice in the right series instead of the whole directory On Sat, 26 Jan 2008, Cameron Ellis wrote:
Hi, I keep getting an error when I submit jobs to seychelles that a COR-.info file cannot be found. Do you know why this would be? I pasted the full command and error log below. Thanks! Cameron
recon-all -i /space/grouch/4/users/ponce/ponce_002d2/3danat/003 -i /space/grouch/4/users/ponce/ponce_002d2/3danat/004 -all -subjid Ponce_002d2 -force
INFO: /autofs/space/grouch_004/users/ponce/Ponce_002d2 exists with -i, but -force specified. Deleting any previous source volumes INFO: SUBJECTS_DIR is /autofs/space/grouch_004/users/ponce Actual FREESURFER_HOME /autofs/space/freesurfer/centos4.0/stable4 -rw-rw-r-- 1 cameo zenuwgp 12297 Jan 26 10:00 /autofs/space/grouch_004/users/ponce/Ponce_002d2/scripts/recon-all.log Linux node0081 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686 i386 GNU/Linux /autofs/space/grouch_004/users/ponce/Ponce_002d2
mri_convert /autofs/space/grouch_004/users/ponce/ponce_002d2/3danat/003 /autofs/space/grouch_004/users/ponce/Ponce_002d2/mri/orig/001.mgz
mri_convert /autofs/space/grouch_004/users/ponce/ponce_002d2/3danat/003 /autofs/space/grouch_004/users/ponce/Ponce_002d2/mri/orig/001.mgz corRead(): can't open file /autofs/space/grouch_004/users/ponce/ponce_002d2/3danat/003/COR-.info $Id: mri_convert.c,v 1.146.2.1 2007/11/30 23:18:44 greve Exp $ reading from /autofs/space/grouch_004/users/ponce/ponce_002d2/3danat/003... Linux node0081 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Sat Jan 26 10:14:40 EST 2008 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer