Hi Lena, in general you only need to fix the skull stripping if it makes any of the downstream processing less accurate. If the surfaces and aseg in the region where the skullstrip leaves are accurate than you don't need to do anything.
cheers, Bruce
On Wed, 2 Sep 2009, Lena Palaniyappan wrote:
Hi all
I am not grasping the concept of skull strip correction full, Im afraid. I have attached a brainmask 128th slice sagittal of which shows some uneven stripping (I couldn¹t attach the huge T1 image to overlay) - is this degree of tissue separation acceptable?
Where does one set a limit? The example set in tutorial data shows some very obvious stripping errors, but the data I have shows really minor stuff and I am always unsure whether to continue auto recon 2 or correct them. Any help?
Many thanks in advance
Cheers LKP
This message has been checked for viruses but the contents of an attachment may still contain software viruses, which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation.