As far as I can tell, mergeseg is in 7.4.1. Do you not see it in $FREESURFER/bin/mergeseg ?
On 11/27/2024 5:30 PM, Andrew M wrote:
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I'm looking to merge the aparc+aseg.mgz with outputs from additional seg steps such as ThalamicNuclei (e.g., ThalamicNuclei.v13.T1T2.FSvoxelSpace.mgz)
I see in history there used to be a function mergeseg, but maybe doesn't exist anymore?
I also found in freesurfer/7.4.1/trctrain/hcp separate subject folders which have aparc+aseg+thalnuc.nii.gz, which is exactly what I'm looking for, except not in the correct space (hoping to keep in the same space as the original aparg+aseg, which ThalamicNuclei.v13.T1T2.FSvoxelSpace.mgz is in).
Thank you!
Andrew
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