Hi Will,
I noticed this as well. I don't know Doug's thinking, but I suspect it was just to avoid generating lots of files. The new script overwrites the lh.seghead, when smoothing. I would just update your script to use lh.seghead instead of lh.smseghead.
HTH D
Will Woods wrote:
Hi,
In my previous lab, which I no longer have access to, we ran mkheadsurf as part of postprocessing, and it generated smseghead files. The latest version of Freesurfer which I recently downloaded (with mkheadsurf version v 1.8 2011/03/02 20:16:39 nicks Exp) does not generate these files - and moreover the smheadsurf environment variable (which defaults to 'smseghead') in the mkheadsurf script does not appear to be used for anything in that script. Have I forgotten to do something in the earlier processing stages, or have things changed?
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