Re: [Freesurfer] Average brain error

What happens when you type

which getpwdcmd

And can you see the file in $FREESURFER_HOME/fsfast/bin?

Anna Rotarska-Jagiela wrote:

Dear Doug, thank you for your response. The path you named is added. Is there anything else we can check? Anna

2009/11/16 Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>

Try adding $FREESURFER_HOME/fsfast/bin to your path.


doug

Anna Rotarska-Jagiela wrote:
>
>
> Dear Freesurfer Users,
> during the creation of average brain with Freesurfer, I got the
> following ERROR message:
> > > getpwdcmd: command not found
> > > ERROR: format for rh.orig.avg.area.mgh not recognized.
> > > ERROR: make_average_surface
>
> do you have any idea what this might be? The Freesurfer version I'm
> using is 4.4.0. I also attach the log file.
> I would appreciate your help.
> Sincerely,
> Anna Rotarska-Jagiela
>
>
>
> --
> ------
> Dr. Anna Rotarska-Jagiela
> Max Planck Institute for Brain Research
> Department of Neurophysiology
> Deutschordenstr. 46
> 60528 Frankfurt a.M.
> Germany
> Email: rotarska@mpih-frankfurt.mpg.de
<mailto:rotarska@mpih-frankfurt.mpg.de>
> <mailto:rotarska@mpih-frankfurt.mpg.de
<mailto:rotarska@mpih-frankfurt.mpg.de>>
> Phone: +49 69 6301 83782
> Fax: +49 69 6301 3833
> ------
> http://www.mpih-frankfurt.mpg.de/global/Np/Staff/rotarska.htm
> ------
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>

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--

Dr. Anna Rotarska-Jagiela Max Planck Institute for Brain Research Department of Neurophysiology Deutschordenstr. 46 60528 Frankfurt a.M. Germany Email: rotarska@mpih-frankfurt.mpg.de mailto:rotarska@mpih-frankfurt.mpg.de Phone: +49 69 6301 83782 Fax: +49 69 6301 3833

---

http://www.mpih-frankfurt.mpg.de/global/Np/Staff/rotarska.htm