Thanks a lot for the very quick reply!
does this look OK? mri_annotation2label --subject P2 --hemi rh --outdir freeSurfer_Results/P2/moj_labels/ --lobesStrict freeSurfer_Results/P2/moj_labels/freeSurfer_lobes
how can I convert the annotation file to nii.gz?!
also, could please explain a bit what the "aseg" file contains? because I though that file had the complete sub-cortical parcellation (including different parts of different lobes!)
sorry if my questions are rather basic, I'm very new to freeSurfer
-M On 11/19/2013 11:21 AM, Douglas N Greve wrote:
Try running mri_annotation2label with the --lobesStrict option doug
On 11/19/2013 11:15 AM, Mojdeh Zamyadi wrote:
Hi all,
I'm interested in getting a lobar segmentation of the cortex and I've already ran recon-all on my subjects. I'm now confused by the outputs and was wondering if someone could tell me which output file contains segmentation that can be merged to get a 4 lobe parcellation similar to: http://freesurfer.net/fswiki/CorticalParcellation?
Thanks a lot, -Mojdeh
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