External Email - Use Caution
Hi Andrei,
Glad to know it worked. I also encountered the problem before and found the solution in the script itself.
Best regards,
Kiyotaka
On Sun, Mar 20, 2022 at 12:32 AM Andrei Bieger andreibieger@gmail.com wrote:
External Email - Use CautionGreetings, Professor Nemoto,
Your solution worked like a charm. Thank you very much!
Best regards Andrei
Em sáb., 19 de mar. de 2022 às 12:03, Kiyotaka Nemoto < kiyotaka@nemotos.net> escreveu:
External Email - Use CautionHi Andrei,
You need to use sudo to use the script because it tries to install files under $FREESURFER_HOME. curl fails because the script tries to download a file in $FREESURFER_HOME where you don't have permission to write without sudo. You also need to set FREESURFER_HOME for the sudo environment.
The command below should work for you.
sudo FREESURFER_HOME=$FREESURFER_HOME $FREESURFER_HOME/bin/fs_install_mcr R2014b
Hope this helps,
Kiyotaka
On Sat, Mar 19, 2022 at 11:32 PM Andrei Bieger andreibieger@gmail.com wrote:
External Email - Use CautionHello, everyone,
I`m having trouble installing the MatLab Runtime 2014b as required for running the new hippocampal subfields pipeline. The "fs_install_mcr 2014b" command returns me the message below:
*andrei@andrei-VirtualBox:~/Programs/freesurfer/7.2.0/bin$ fs_install_mcr 2014b % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed100 10 100 10 0 0 2 0 0:00:05 0:00:04 0:00:01 2Archive: installer.zip End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive.unzip: cannot find zipfile directory in one of installer.zip or installer.zip.zip, and cannot find installer.zip.ZIP, period.*
Then I tried running the specific line of the script to download the file so I could take a look at it:
*andrei@andrei-VirtualBox:~/Programs/freesurfer/7.2.0/bin$ curl --location MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1OakMqmY6U2864VcIrI5u4KRZUm7H860Jb-1dbz_XneQ4EB... https://secure-web.cisco.com/1UHq_hHAhu7HwPLU25e5pyUgtFmgmagCCAXlBmW3qUjcEdSndPCFdsMJetPs5mQiG1LT8OodaBv-ZQNWBv1_vp2myOujucaEMsMKKejeCXm_NgQ_azXgbiexcWuqLTjDhbcKymWv7kh9Za77u2V4PamdiMmT2_uskTI1CB_o8VdP1VFVD-Hyrix0jLQGzWc7PcQw6noKSr8SwKwWssSMNt3DRZtI8NS1Kn71VPEt62tBIjM_r42c7WrlxsKK8xlNYIOEqjtfsdvdwIVgkyn1qJLVgq_LSCa0OMAJEL4UkR1a4AuwoxvOtb5UgaFsBVaVF5i2KTMEGlkZpz4bJp1UHAVo1XuRiSmDS8hT1sKf0shE/https%3A%2F%2Fssd.mathworks.com%2Fsupportfiles%2Fdownloads%2F%24MCR_VER%2Fdeployment_files%2F%24MCR_VER%2Finstallers%2F%24OS_TAG%2FMCR_%24%7BMCR_VER%7D_%24%7BOS_TAG%7D_installer.zip -o installer.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed100 10 100 10 0 0 161 0 --:--:-- --:--:-- --:--:-- 161andrei@andrei-VirtualBox:~/Programs/freesurfer/7.2.0/bin$ file installer.zipinstaller.zip: ASCII text*
*andrei@andrei-VirtualBox:~/Programs/freesurfer/7.2.0/bin$ unzip installer.zipArchive: installer.zip End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive.unzip: cannot find zipfile directory in one of installer.zip or installer.zip.zip, and cannot find installer.zip.ZIP, period.*
It does not recognize it as a .zip file, and the Ubuntu Archive Manager won`t recognize it either: *"An error occurred while loading the archive."* I know this is more of a Linux/Matlab issue than a freesurfer one. But I wonder if anyone else is facing this issue? Might that be a problem with the curl package, Matlab support to older Runtime versions or my Linux distro? Also, could you please give me instructions on where to install the file manually from *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1NW1jI79S4zAnBgAwfi7ciHnQlfeOZmvB1aHjCUwjJHdeQ-... https://secure-web.cisco.com/1f47DuzXT9iWt3QZ-FmPoYU6PuX8nCvVAsdXGDH3F_QY6C-uhaYzYBPq2Nj-u7AAfKl7Kb1LyNWJXbZYw7f5sR25q_cZTymPGARJFrtClH0V_qQAKURS7I7-vZxCWLfSrYZEgNL0pNSZrKm7Bs1Xt0nqRgy-xLZyuWAvGaSUHej5kMWyMCk6bFgDasOXz23S9QUUmL1faKLypZNGfy27Q3s89bh7KTeOTGfEPAvEzh43iCSsXCR0GImu5Jv4ZuSqWexHF4RnSp3Hr3-3tQ5fT0XLvJvthOFMeWwemdrXx9DHN5AI4WoZQBH20RyW84cT3kRY_xBnneH-nxhjt2ERcNlYrdygesks8yeuQ_K5K2lA/https%3A%2F%2Fwww.mathworks.com%2Fproducts%2Fcompiler%2Fmatlab-runtime.html ?
Thank you!
-- Andrei Bieger _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1s5T-Q-O4XyM3wD9u2qk1pCn8PNv0BrV3bU_Heifif0fZ_W... https://secure-web.cisco.com/18Rs4WcgeRepff5I2lpYevAjbEq_DG7hRh9NpblYAPR6vorIrAsTm8Q9PkcMOc3YtsiJ3ifz5P52qymSL0Yoak__5xaYBhPJgWVHH_WT3XWXpCC1tn33eHvexRxQP8omc9RNz3lBRefDZ0onQb935H3LOMQUYAxa1tRi2JFVWeME7fVASZRSomzULviv4KnUOGnzUj-JoGH4xuqnfc8YVRY-loJGpE7_Yg8kQAiCXREIVIhg8A7idnw1YwlqwxJKHYsLnQxULYSzmhoKzvXeotLGI3SrX8N5ojkW3hUccRX1gOjFFG8ZILmp-5Lh8FDf43OABUeh2KFevaWNiKmPC7Ofr6xrhJQMyawZUGTwL50E/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zv46QmZvWx2w2lByDpzGbFRbsT9eI7qxBV7lLUBKaNnevN... https://secure-web.cisco.com/1ID11IFjoLtkV3k1cZcwmJzNl7qpxEFfpLA1ZIub07nvNw0INVZhvYgIKbXPiaMebbKWUK6Dy09H8DN_LpLkDnui4Fr7NCsgz-E8nZ82tFfGMgEB-PxUOi6JBaXTZlaurNxrvrdiJzMfjEVjwtkxnSObqG00a83zD0ukCqFpJ4Kk3tc4GMgVWxvy-xI_rsiL6Gqwfcr9LuBNOIUuSFvYX13iAx0a71m9jqo6eDaetBpYmptqv4LgqtWQLe70x5SnjH7Y-imEGgGsVtWjWHLHDTc4QJpL7NgEFyjASKFRxxhCfRfKpeOZmKnW4sTHO9CrV4JyGKF0ZFAnQBezjYcnrE1oKI9BQMbFfVuCQj8DkrGg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zv46QmZvWx2w2lByDpzGbFRbsT9eI7qxBV7lLUBKaNnevN... https://secure-web.cisco.com/1ID11IFjoLtkV3k1cZcwmJzNl7qpxEFfpLA1ZIub07nvNw0INVZhvYgIKbXPiaMebbKWUK6Dy09H8DN_LpLkDnui4Fr7NCsgz-E8nZ82tFfGMgEB-PxUOi6JBaXTZlaurNxrvrdiJzMfjEVjwtkxnSObqG00a83zD0ukCqFpJ4Kk3tc4GMgVWxvy-xI_rsiL6Gqwfcr9LuBNOIUuSFvYX13iAx0a71m9jqo6eDaetBpYmptqv4LgqtWQLe70x5SnjH7Y-imEGgGsVtWjWHLHDTc4QJpL7NgEFyjASKFRxxhCfRfKpeOZmKnW4sTHO9CrV4JyGKF0ZFAnQBezjYcnrE1oKI9BQMbFfVuCQj8DkrGg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
-- Kiyotaka Nemoto, M.D., Ph.D. Associate Professor Department of Psychiatry Division of Clinical Medicine, Faculty of Medicine University of Tsukuba 1-1-1 Tennodai Tsukuba, Ibaraki 305-8575, Japan E-mail: kiyotaka@nemotos.net _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1s5T-Q-O4XyM3wD9u2qk1pCn8PNv0BrV3bU_Heifif0fZ_W... https://secure-web.cisco.com/1_dH3syThow2EZ5cP2K-2zZ6G6mLyE61hnCnRF2KvPjmV-T5u2CSVvKT_84eSSXSFF9ppyASd6ALKOJjXKuMa_39RHVt_BvKDJM3hV-Y25Wc0kPBwgdLjd7HtEG8JCD-HqZT1DK14fU6bURalYjPN5flj56jx7UOXU5XDtL_wN7oSkyHWQA8GUQ9S8hRvm-eLq2-qX6vAQVbLmHQiSlnRIKvP5h1TRYFw1xWbYh3yGrlq1XYCoi0a6zPXfO4VweLuJdBpuqnZOS5Ia8BXzQhRKrtnRfsfkOKWb9S_BHJRPAJnpFSJ0jUBSxaC85LpY1mLzRCMsP9vjf10fKycydnt-LGTILa4Vs77qnBUY-MlC3I/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zv46QmZvWx2w2lByDpzGbFRbsT9eI7qxBV7lLUBKaNnevN... https://secure-web.cisco.com/1CNC9iov8y08hKaaz8-dViROLi9C2VE3A-KjyQ45V2hIiOHvvOMOJ3grPXwefUH2C3b0ybOse8cm7XcAD5ilfkN3438B-5O9m6XmW-fTDlNCnUVZustGpuOZGGR25pP7fm4gHVAZcGIuMkK4MY6ScVclu7J3lLflbNUWx7c-C9Nhu0yL9Catteq3sDvsaL1EbwLjJVfXyR1gioIL6sKweblOibm8LipuYCJxnIzNSiKsA7UT7N-Vjec3PrgqPUeko5ABY_P5i5E8v_ppjkrgvNmUZ9wdrzzfRWJ7AKmW-fJRVB_H9WGVyDsT_CMungFeiBhnspQ59vrXNh1T1fSoXik-EmYg6QTXprgH8ID7gy0M/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zv46QmZvWx2w2lByDpzGbFRbsT9eI7qxBV7lLUBKaNnevN... https://secure-web.cisco.com/1CNC9iov8y08hKaaz8-dViROLi9C2VE3A-KjyQ45V2hIiOHvvOMOJ3grPXwefUH2C3b0ybOse8cm7XcAD5ilfkN3438B-5O9m6XmW-fTDlNCnUVZustGpuOZGGR25pP7fm4gHVAZcGIuMkK4MY6ScVclu7J3lLflbNUWx7c-C9Nhu0yL9Catteq3sDvsaL1EbwLjJVfXyR1gioIL6sKweblOibm8LipuYCJxnIzNSiKsA7UT7N-Vjec3PrgqPUeko5ABY_P5i5E8v_ppjkrgvNmUZ9wdrzzfRWJ7AKmW-fJRVB_H9WGVyDsT_CMungFeiBhnspQ59vrXNh1T1fSoXik-EmYg6QTXprgH8ID7gy0M/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
-- Andrei Bieger _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1s5T-Q-O4XyM3wD9u2qk1pCn8PNv0BrV3bU_Heifif0fZ_W... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1zv46QmZvWx2w2lByDpzGbFRbsT9eI7qxBV7lLUBKaNnevN... < https://secure-web.cisco.com/1zv46QmZvWx2w2lByDpzGbFRbsT9eI7qxBV7lLUBKaNnevN... . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.