External Email - Use Caution
I am using a VNC so it is difficult for me to send output files. IS this screenshot enough?
Nada
On Aug 22, 2018, at 5:48 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
Can you send the terminal output and/or the log file?
On 08/22/2018 09:49 AM, Nada Naguib wrote:
External Email - Use CautionHello, thank you for your response, yes My terminal is in the tcsh shell so I’m not sure why it’s not working
Nada
On Aug 22, 2018, at 3:22 PM, Adam Martersteck <acmarter@gmail.com mailto:acmarter@gmail.com> wrote:
External Email - Use CautionAre you sure you're terminal is setup in tcsh or csh? If you're using bash instead, you want "export SUBJECTS_DIR=/project/bil/Nada" Take a look at: https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Mac or https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Linux to see if you may have missed something.
On Wed, Aug 22, 2018 at 4:37 AM Nada Naguib <nadann@bu.edu mailto:nadann@bu.edu> wrote:
External Email - Use CautionHello,
I have been using bbregister in this format
bbregister —mov dkti4d.nii —s NewT2out —init-fsl —bold —lea register.lta
NewT2out is the output of the free surfer processing on the T1 image and dkti4d.nii is the template file I want to use for the registration.
it has worked before but now there is a new error
ERROR: cannot find NewT2out in /project/iconic/apps/freesurfer/5.3.0/install/subjects
even though I have already ran the command:
setenv SUBJECTS_DIRECTORY /project/bil/Nada
This path is where both NewT2out and dkti4d.nii are located.
I don’t understand what is going wrong
Best Nada
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