Hi Daiana
run mri_vol2vol --help. It has a bunch of examples and quite extensive help (thank you Doug!) Bruce
On Thu, 9 Nov 2017, Daya P wrote:
Hi Bruce, Can you give me some example code? I am not sure where the talairach would go?
On Thu, Nov 9, 2017 at 1:21 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Daiana
You should be able to use mri_vol2vol on the aparc+aseg.mgz and the talairach.xfm in the subject's mri/transforms dir. cheers Bruce On Thu, 9 Nov 2017, Daya P wrote: > Hi All, > I processed a bunch of subjects using recon-all, but now I would like to get labels from > aparc.a2009s.annot from each subject in MNI space in nii from, the problem is that the annotation > file (lh and rh) is in subject native space. I have a grey matter mask in MNI from each subject and > my goal is to have each label from aparc.a2009s.annot to fit that mask. > How can I do this? > > Thank you, > Daiana > >
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