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Hello FreeSurfer Developers,
I am trying to use dcmunpack to transform dicom images to a nifti format inside a FSFAST formatted directory ( https://secure-web.cisco.com/1JV-FemocV4fiLoKofgFHZ2hQTt_nlpR8LAqJEXvFr3d88Y...), however I am having issues understanding how to use properly the -run argument.
This is the command I am trying to use:
dcmunpack -src fMRI_dir -targ sessionid -fsfast -run 2 rest nii.gz f.nii.gz
I assume I am making some mistakes with the command, specially with the run arguments since this is the error that I got in the terminal: ERROR: could not find run 2 in data
My directory contains fMRIs downloaded directly from the ADNI database and grouped in folders following this structure:
/fMRI_dir/subject_id/Axial_rsfMRI/date/image_uid/dicom images
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to solve this?
1) FreeSurfer version: freesurfer_ubuntu20-7.4.0_amd64.deb 2) Platform: Ubuntu 20.04 in WSL
Thanks for your help.