Actually, I changed this a few weeks ago. It now creates a temp dir in the output directory, so it should be in the next release.
doug
Vicka Corey wrote:
/tmp on a mac is usually a link to /private/tmp, under which each user will have their own directory (e.g. for me, /private/tmp/corey).
if this is a program we want to support this way we may want to modify the code to handle this in a more mac-compatible way.
--vicka
On Mon, Oct 18, 2004 at 06:17:37PM -0400, Doug Greve wrote:
I don't know that much about Macs. I assume that they have a /tmp that is writable? It might be the case that that dir does not have enough space to hold an mri COR volume. You can change the temp dir that mri_motion_correcct2 uses with the "-tmpdir your/new/tmp". See if that solves the problem.
doug
Kushal Koolwal wrote:
hi everyone,
Well I couldn't run the mri_motion_correct on my Mac machine but I found another tool called mri_motion_convert2 in the /bin/noarch folder of freesurfer. I was able to run the utility by specifying output directory and the input files.
But after it did all the processing it gives an error like: Motion Correcting /tmp/cor-2.mnc Mon Oct 18 15:03:59 PDT 2004 Error: opening MINC file "/tmp/cor-2.mnc". Error in minctracc in file minctracc.c, line 381 Cannot input volume '/tmp/cor-2.mnc'ERROR: mritoself failed [d99-94:bert/mri/orig] scottfre%
I am attaching the error log file if any one wants to have a detail look.
Sincerely,
Kushal Koolwal
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Name: mri_motion_correct2.logmri_motion_correct2.log Type: unspecified type (application/octet-stream) Encoding: base64 Description: mri_motion_correct2.log
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer