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Dear Freesurfer team,
I already found the error.
Kind regards, Rosie
On Mon, Jul 5, 2021 at 3:31 PM Rosalia Dacosta Aguayo rdacostaa@gmail.com wrote:
Dear Freesurfer team,
I am having the following error message when I try to run the stats table:
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/CAN_RUTI/FREESURFER_CAN_RUTI $ asegstats2table --subjects sub-002_ses-BSL sub-003_ses-BSL sub-004_ses-BSL sub-005_ses-BSL sub-006_ses-BSL sub-007_ses-BSL sub-009_ses-BSL --meas volume --tablefile aseg_stats.txt SUBJECTS_DIR : /home/rosalia/Desktop/CAN_RUTI Parsing the .stats files
ERROR: Cannot find stats file /home/rosalia/Desktop/CAN_RUTI/sub-002_ses-BSL/stats/aseg.stats Use --skip flag to automatically skip bad or missing stats files
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/CAN_RUTI/FREESURFER_CAN_RUTI $
The problem is that there is an actual aseg.stats in this directory where it says it cannot find it.
Any idea why is this happening?
Kind regards, Rosie