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Good afternoon,
I've got two types of aseg.stats results from the file automatically created from the regular script (recon-all -all). I am especially interested in the SupraTentorialVolNotVent.
Here goes two examples:
*Title Segmentation Statistics # # generating_program mri_segstats# cvs_version $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $# cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject SUBJ123 # sysname Linux# hostname rachael.localdomain# machine x86_64# user fernanda.hansen# anatomy_type volume# # SUBJECTS_DIR /dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS/DICOM_PARA_RECONVERSAO2NII/SEG# subjectname SUBJ123# Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 211672.093308, mm^3# Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 216185.270458, mm^3# Measure Cortex, CortexVol, Total cortical gray matter volume, 427857.363767, mm^3# Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 227845.296875, mm^3# Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 227386.531250, mm^3# Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 455231.828125, mm^3# Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 171469.000000, mm^3# Measure TotalGray, TotalGrayVol, Total gray matter volume, 599326.363767, mm^3# Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1050908.034545, mm^3# Measure IntraCranialVol, ICV, Intracranial Volume, 1734351.873615, mm^3# SegVolFile mri/aseg.mgz Title Segmentation Statistics # # generating_program mri_segstats# cvs_version $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $# cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject SUBJ123 # sysname Linux# hostname rachael.localdomain# machine x86_64# user fernanda.hansen# anatomy_type volume# # SUBJECTS_DIR /dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS/DICOM_PARA_RECONVERSAO2NII/SEG# subjectname SUBJ123# Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 211672.093308, mm^3# Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 216185.270458, mm^3# Measure Cortex, CortexVol, Total cortical gray matter volume, 427857.363767, mm^3# Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 227845.296875, mm^3# Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 227386.531250, mm^3# Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 455231.828125, mm^3# Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 171469.000000, mm^3# Measure TotalGray, TotalGrayVol, Total gray matter volume, 599326.363767, mm^3# Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1050908.034545, mm^3# Measure IntraCranialVol, ICV, Intracranial Volume, 1734351.873615, mm^3# SegVolFile mri/aseg.mgz*
and
*Title Segmentation Statistics # # generating_program mri_segstats# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $# cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject PRI018 # sysname Linux# hostname deckard.localdomain# machine x86_64# user fernanda.hansen# anatomy_type volume# # SUBJECTS_DIR /dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS# subjectname PRI018# Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 939020.000000, mm^3# Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 903909.000000, mm^3# Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 903725.881149, mm^3# Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 194350.327731, mm^3# Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 194703.516764, mm^3# Measure Cortex, CortexVol, Total cortical gray matter volume, 389053.844495, mm^3# Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 182649.297520, mm^3# Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 182762.739133, mm^3# Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 365412.036654, mm^3# Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 52056.000000, mm^3# Measure TotalGray, TotalGrayVol, Total gray matter volume, 518287.844495, mm^3# Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 839187.881149, mm^3# Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 807827.881149, mm^3# Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 806671.000000, mm^3# Measure Mask, MaskVol, Mask Volume, 1368243.000000, mm^3# Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.663000, unitless# Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.966056, unitless# Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 62, unitless# Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 93, unitless# Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 155, unitless# Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1416319.091398, mm^3# SegVolFile mri/aseg.mgz * How can I have the aseg.stats files all the same, with the SupraTentorialVolNotVent?
Thank you in advance!