16 Jan
2023
16 Jan
'23
2:17 p.m.
External Email - Use Caution
Hi all,
I would like to know how to quantify the regional volume using an external atlas. I already ran the recon all command and now I want to quantify the volume not with the default Freesurfer atlases, but a specific atlas that is in the MNI space. Should I transform the atlas to each subject's native space before quantifying? How should I do it? Then how do I quantify it and make sure it was done correctly? Could you provide me with command line suggestions? And if I wanted to work with everything on the MNI space, how would the code be like?
Also,
Best,
--
Beatriz Araújo Cavendish, MSc
PhD student | Psychologist
University of São Paulo
São Paulo/SP - Brazil