Hello everyone,
I tried doing the QDEC group analysis tutorial, however after doing everything as instructed in the tutorial, when pressing Analyze I get the error message:
*Error in Analyze: command failed: mri_concat /media/Dell/_FS/buckner_data/subjects/140/surf/lh.thickness.fwhm10.fsaverage.mgh /media/Dell/_FS/buckner_data/subjects/049/surf/lh.thickness.fwhm10.fsaverage.mgh (..)*
..even though those files are all accessible there! I pasted that same mri_concat manually into the terminal, however no output is produced at the command prompt, nor any files are created.
In previous attempts, I used to also get this error
*" .ERROR: QdecProject::VerifySubjects: Couldn't find subject '032' in SUBJECTS_DIR "* *Syntax error: Bad fd number"*
after following the sh/bash workaround from this https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2008-October/008618.htmlprevious thread, I no longer get that error, however get stuck with the error mentioned above.
My SUBJECTS_DIR already contains a copy of the default subjects folder.
Debug info below. Any help greatly appreciated! Tudor
-------- freesurfer-Linux-centos4-stable-pub-v5.1.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/virtualuser/freesurfer FSFAST_HOME /home/virtualuser/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /media/Dell/_FS/buckner_data/subjects MNI_DIR /home/virtualuser/freesurfer/mni