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Thank you very much. I´ll check that!.
On Wed, May 2, 2018 at 3:16 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
You are using two different versions of mri_segstats (probably two different versions of FS) and getting different results. Why not just use one version?
On 05/02/2018 01:24 PM, Fernanda Hansen P. de Moraes wrote:
Good afternoon,
I've got two types of aseg.stats results from the file automatically created from the regular script (recon-all -all). I am especially interested in the SupraTentorialVolNotVent.
Here goes two examples:
/Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject SUBJ123 # sysname Linux # hostname rachael.localdomain # machine x86_64 # user fernanda.hansen # anatomy_type volume # # SUBJECTS_DIR
/dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS/DICOM_PARA_RECONVERSAO2NII/SEG
# subjectname SUBJ123 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 211672.093308, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 216185.270458, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 427857.363767, mm^3 # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 227845.296875, mm^3 # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 227386.531250, mm^3 # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 455231.828125, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 171469.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 599326.363767, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1050908.034545, mm^3 # Measure IntraCranialVol, ICV, Intracranial Volume, 1734351.873615, mm^3 # SegVolFile mri/aseg.mgz Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject SUBJ123 # sysname Linux # hostname rachael.localdomain # machine x86_64 # user fernanda.hansen # anatomy_type volume # # SUBJECTS_DIR
/dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS/DICOM_PARA_RECONVERSAO2NII/SEG
# subjectname SUBJ123 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 211672.093308, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 216185.270458, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 427857.363767, mm^3 # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 227845.296875, mm^3 # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 227386.531250, mm^3 # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 455231.828125, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 171469.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 599326.363767, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1050908.034545, mm^3 # Measure IntraCranialVol, ICV, Intracranial Volume, 1734351.873615, mm^3 # SegVolFile mri/aseg.mgz/
and
/Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject PRI018 # sysname Linux # hostname deckard.localdomain # machine x86_64 # user fernanda.hansen # anatomy_type volume # # SUBJECTS_DIR
/dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS
# subjectname PRI018 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 939020.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 903909.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 903725.881149, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 194350.327731, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 194703.516764, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 389053.844495, mm^3 # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 182649.297520, mm^3 # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 182762.739133, mm^3 # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 365412.036654, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 52056.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 518287.844495, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 839187.881149, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 807827.881149, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 806671.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1368243.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.663000, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.966056, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 62, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 93, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 155, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1416319.091398, mm^3 # SegVolFile mri/aseg.mgz / How can I have the aseg.stats files all the same, with the SupraTentorialVolNotVent?
Thank you in advance!
Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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