External Email - Use Caution
And you seem to be running FreeSurfer as root. Since that could complicate matters, could you run it as a normal user?
Best, Horsng
On Feb 24, 2021, at 9:36 AM, Horsng Junn hsjunn@gmail.com wrote:
Hi Ishi,
I'm actually not a FreeSurfer developer and this question seems beyond me, but my googling leads to this page: https://secure-web.cisco.com/1J96FRdW9b30grp2ZKVoOToURCtWoMNvRVujwywyg_8-dnz... https://secure-web.cisco.com/1J96FRdW9b30grp2ZKVoOToURCtWoMNvRVujwywyg_8-dnzChY7mF4O26rtAy5IRwnW_AUTLc3NyneJNA50jjEVOXpbI4dZC473KwMJggVytdgBIRr71ekxd8YXDmrZITYqzNG0A84Oz0a0_j-f9chQHRFjVJfTuTpTAPNL4Wo-w6SWdOnsVA8JRnCaR8qo75dzxZNr7BeOYrzjdQM06h8MZJkqd1LV0hvaj__eT2EaJcoJ-8aqyXpOk3lldYcJCf/https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fanswers%2F459827-why-do-i-receive-a-glibcxx-not-found-error-on-my-redhat-or-centos-linux-machine
which seems to suggest that you add the following to your .bashrc, .profile or similar places and retry.
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/freesurfer/MCRv84/sys/os/glnxa64
Please try this and report your result. If this doesn't work, hopefully a FreeSurfer developer would chime in.
Best, Horsng
On Feb 23, 2021, at 8:19 PM, Ishi Tandon AIB, Jaipur <ishi.tandon@student.amity.edu mailto:ishi.tandon@student.amity.edu> wrote:
External Email - Use CautionHello,
I am sorry for posting up another thread. Had an issue with subscription so had to post again (will keep it in mind now).
I tried that out. And that worked well.
But there's another error that pops up after I run (attached in the image): - recon-all -all -s bert
I tried the following commands in order to update libstd. apt-get update apt-get install libstdc++6 But that didn't work.
I am not able to trace the exact error.
Thanks for the help.
On Tue, Feb 23, 2021 at 11:56 AM Horsng Junn <hsjunn@gmail.com mailto:hsjunn@gmail.com> wrote: External Email - Use Caution
Hi Ishi,
You apparently omitted an "n": it must be libncurses5-dev (please note the n after lib).
And please try to keep previous correspondences intact, as otherwise the devs must hunt the mail archive for the detail.
Best, Horsng
On Feb 23, 2021, at 3:10 PM, Ishi Tandon AIB, Jaipur <ishi.tandon@student.amity.edu mailto:ishi.tandon@student.amity.edu> wrote:
External Email - Use CautionHello experts,
In response to the previous email about matlab installation error while attempting to use hippocampal subfields.
I tried the following command as suggested by you :-
sudo apt-get install libcurses5-dev
But I get the following error :-
Reading package lists... Done Building dependency tree Reading state information... Done E: Unable to locate package libcurses5-dev
Also, I am using fs version 7.1.1. I installed freesurfer-linux-centos7_x86_64-7.1.1.tar.gz file.
Regards, Ishi Tandon B.Tech + M.Tech - Cognitive Neuroscience Amity University, Rajasthan Contact- +918239259846 Email - ishi.tandon99@gmail.com mailto:ishi.tandon99@gmail.com
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