1 Apr
2019
1 Apr
'19
11:12 a.m.
Hi Emanuel,
You can use this command to load customized color table file:
freeview -v brain.mgz:colormap=lut:lut=color_table_file.txt
Best, Ruopeng
On 4/1/19 10:40 AM, Emanuel Alvaredo wrote:
Thanks Bruce, Do you know what is the command line option? Thanks! Emanuel
On Mon, Apr 1, 2019 at 11:34 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:
I see. You can give freeview a custom lookup table on the command line cheers Bruce On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: > > External Email - Use Caution > > Thanks for the answer Bruce. > Is For segmentations. I have run freesurfer for 100 nomal patients. I have calculated > standard desviation and mean, then I am comparing the results against a patological > patient. So, I would like to open freeview, for example with this command > > freeview -v mri/orig.mgz -f surf/lh.white:edgecolor=blue surf/lh.pial:edgecolor=red > surf/rh.white:edgecolor=blue > surf/rh.pial:edgecolor=red > surf/rh.inflated:overlay=surf/rh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe > el,inverse:overlay=surf/rh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: > overlay=surf/rh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse > surf/lh.inflated:overlay=surf/lh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe > el,inverse:overlay=surf/lh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: > overlay=surf/lh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse > > and show in my custom colores in segments. > > > > > Emanuel > > > On Mon, Apr 1, 2019 at 11:17 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote: > Hi Emanuel > > can you tell us more. For parellations or segmentations? Are you just > changing the color of existing parcels/segments? If so you can just > import it in freeview > cheers > Bruce > > On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: > > > > > External Email - Use Caution > > > > Hello! > > I would like to ask you about customs colormaps. I have created my > > own FreeSurferColorLUT.txt and I would like configure the color map using > command line. > > Is it possible? > > > > Thanks in advance. > > > > Emanuel > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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