I renamed them all to "I.1, I.2, ..., I.8000" (there are 8000 images total), and I got the same error messages. (With the "-it ge" option, it is still looking for the old filename, it seems)
[matlab7@occipital new_func]$ mri_convert I.1 -it lx -ot spm "image" mri_convert I.1 -it lx -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.1... genesisRead(): can't determine file name format for /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.1
[matlab7@occipital new_func]$ mri_convert I.1 -it ge -ot spm "image" mri_convert I.1 -it ge -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.1... fname_format : /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.%03d genesisRead(): error opening file /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.001
[matlab7@occipital new_func]$ mri_convert I.1 -it dicom -ot spm "image" mri_convert I.1 -it dicom -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.1... Starting DICOMRead2() dcmfile = /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.1 dcmdir = /raid2/fmri5/LDProj/BOSEN/functional/new_func ERROR: /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.1 is not a dicom file
Douglas N Greve wrote:
can you rename your files to remove the .s01?
Chris Watson wrote:
Hello, I'm trying to use mri_convert to convert old (~1999) functional data that was acquired on a GE LX scanner. However, nothing seems to work. I'm running version 4.4.0 on RHEL4 x86_64. Here's my command line: (results are similar if I omit the -in_type flag)
[matlab7@occipital functional]$ mri_convert I.001.s01 -it lx -ot spm "image" mri_convert I.001.s01 -it lx -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.001.s01... genesisRead(): can't determine file name format for /raid2/fmri5/LDProj/BOSEN/functional/I.001.s01
[matlab7@occipital functional]$ mri_convert I.001.s01 -it ge -ot spm "image" mri_convert I.001.s01 -it ge -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.001.s01... fname_format : /raid2/fmri5/LDProj/BOSEN/functional/I.%03d genesisRead(): error opening file /raid2/fmri5/LDProj/BOSEN/functional/I.001
[matlab7@occipital functional]$ mri_convert I.001.s01 -it dicom -ot spm "image" mri_convert I.001.s01 -it dicom -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.001.s01... Starting DICOMRead2() dcmfile = /raid2/fmri5/LDProj/BOSEN/functional/I.001.s01 dcmdir = /raid2/fmri5/LDProj/BOSEN/functional ERROR: /raid2/fmri5/LDProj/BOSEN/functional/I.001.s01 is not a dicom file
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