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Hi Misque,
I see the error in your recon-all.log “ 7.4.1 (freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460) ERROR: Executable 'lta_convert -all-info failed! Is it missing from the distribution?' “
Here is some information on how to set up Freesurfer on Mac - https://secure-web.cisco.com/1Wx0z_tw2w2WyPGsxqDZHPgpnq18mkkoGjEO-ae48MqpV3_...
I’m assuming that you sourced SetUpFreeSurfer.sh from your Freesurfer install directory.
Can you check where your recon-all is and if lta_convert is in the distribution? 1. which recon-all 2. ls -l <recon-all_path>/lta_convert
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Misque Boswell Sent: Sunday, July 2, 2023 8:40 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error Help
External Email - Use Caution Hi,
I am new to FS and recently downloaded the package per instructions on your site. I set up the path and everything seems to be fine until I attempt to use any functions.
I have searched for answers on this error, but I cannot seem to find anything so I am hoping you can direct me in fixing this.
I am attaching the error log. I also tried to preprocess “bert” and got the same message.
Thank you!
Misque