Hi Doug,
I copied the mri_segstats patch you provided to my freesurfer/bin location and reran the pipeline. However, I'm getting the same issue. Autorecon2 seems unable to create the ribbon.mgz file. Do you have any other suggestions for fixing this error? Also, can you explain what the ribbon.mgz file is used for, and how important it is for processing and analysis steps further down the line?
Thanks, Phil
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N Greve greve@nmr.mgh.harvard.edu Sent: Monday, February 29, 2016 2:06 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Patch for ribbon.mgz failure
try copying this to $FREESURFER_HOME/bin ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats
On 02/24/2016 01:21 PM, Philip Deming wrote:
Hi Freesurfer team,
I'm having an issue running -autorecon2. The program exits with errors because it is unable to create the ribbon.mgz file. According to the version 5.3 release notes, there is a patch available to fix this issue:
Creation of the aseg.stats table fails when only running -autorecon1 or -autorecon2 because ribbon.mgz is not present. This has been fixed. Ask for a patch.
How can I obtain the patch to fix the ribbon.mgz issue?
Thanks,
Phil
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