Hi Sudhin, this looks like an AFNI question. Have you tried posting to the AFNI list? doug
Sudhin A. Shah wrote:
On Jun 17, 2011, at 6:25 PM, "Sudhin A. Shah" <sut2006@med.cornell.edu mailto:sut2006@med.cornell.edu> wrote:
Hi,
Can somebody please help me figure out how to correct this issue?
1 subject - 2 functional scans
run recon-all on subject anatomical.
process functional series (using AFNI/FSL) - each individually.
use
(http://afni.nimh.nih.gov/pub/dist/doc/program_help/@ROI_Corr_Mat.html) @ROI_Corr_Mat -ts proc_func1 -roi aparc+aseg -prefix all (each individually)
This works (I don't know why since I am not doing anything to register them to a common space).
- I get a square matrix of 109 (n x n correlation matrix) in 1
timepoint and 112 in 2nd timepoint.
I would like to get the /exact same number /so I can compare them! Of course I can manually adjust the rows/columns later, but I am not sure this is the smartest way to do this.
Can I do all the steps in Freesurfer?
Thank you, S _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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