You should be able to get the correct syntax by checking the recon- all.log file for an example.
cheers, -MH
On Fri, 2012-05-18 at 15:48 +0100, Inês Violante wrote:
Hi,
Thanks Michael. However, when I try to do this using the aparc.annot file:
mris_anatomical_stats -l CS/label/lh.aparc.annot -b CS lh pial
I receive this error:
mris_anatomical_stats: could not scan # of lines from CS/label/lh.aparc.annot
I imagine this happens because the mris_anatomical_stats is waiting for a .label file
What I aim is the output of the aparcstats2table for the surface area using the pial surface.
Perhaps I am not using the correct command....
Thanks for the help.
ines
On Fri, May 18, 2012 at 3:41 PM, Michael Harms mharms@conte.wustl.edu wrote:
The last argument of mris_anatomical_stats allows you to specify the surface to use (pial in your case)
cheers, -MH
NAME mris_anatomical_stats
SYNOPSIS mris_anatomical_stats [options] <subjectname> <hemi> [<surfacename>]
On Fri, 2012-05-18 at 15:18 +0100, Inês Violante wrote:
Hi,
I need to know the surface area of the structures in the aparc file but I want to obtain this measurement from the pial surface and not the white matter surface. How can I do that?
Thank you a lot for your help.
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