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My subjects have pathological tissues, is it fixable by your method?
[image: image.png]
Douglas N. Greve dgreve@mgh.harvard.edu, 28 Haz 2024 Cum, 16:25 tarihinde şunu yazdı:
You have an "extra large" defect that you will probably have to fix by hand. See https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev...
On 6/24/2024 12:42 PM, egemen gok wrote:
External Email - Use CautionThank you for your response. Okay, one more update. I tried recon-all for patients with T1. Unfortunately it doesnt work for my specific dataset. Neither functions like 5ttgen does not work from MRTrix.
I need to process this dataset for a huge study of our faculty. I hope we can fix this.
Kind regards Egemen
Douglas N. Greve dgreve@mgh.harvard.edu, 24 Haz 2024 Pzt, 16:48 tarihinde şunu yazdı:
Can you attach the log file. I can't read the pics you attached
On 6/18/2024 10:56 AM, egemen gok wrote:
External Email - Use Caution*Hello Freesurfer Developers*
recon-all is shutting down for some reason, this is the last lines of the code before shutting down. (It ran approximately 11-12 hours)
and fyi = I used flair image because there was no T1 image of the patient [image: image.png]
and this is the log file (recon-all.log) = [image: image.png]
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