[Freesurfer] dt_recon --> tbss

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Hello,

I am working through dt_recon troubleshooting (One subjects registration to anatomical is skewed leading to incorrect masking of that subjects FA image). I would like to use the dt_recon's FA outputs and input them into FSL's tbss pipeline. My question is are there any steps I should take converting or modifying the FA images so they are compatible with the tbss pipeline. My intention was to take the dt_recon fa or fa-masked into the tbss_1_preproc command?

Are there any considerations I should take into account?

Best *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2442@gmail.com ddcc2442@gmail.com* 443-254-6298