Hi Gabor,
If you run bedpostX on the data outside of tracula using the default options, do you get the same error?
Priti
Dear all,
I've the following error right after starting trac-all -bedp -c configuration_file:
Making bedpostx directory structure Queuing preprocessing stages [: 223: NONE: unexpected operator [: 314: NONE: unexpected operator [: 327: xbedpostx_pre: unexpected operator [: 486: x: unexpected operator [: 486: -le: argument expected Queuing parallel processing stage [: 223: NONE: unexpected operator 0 slices processed [: 327: xbedpostx: unexpected operator [: 486: x70: unexpected operator Queuing post processing stage [: 223: NONE: unexpected operator [: 314: NONE: unexpected operator [: 327: xbedpostx_post: unexpected operator [: 486: x: unexpected operator [: 486: -le: argument expected
From the created files it seems that the first error occurs at
"preprocid=`${BPDIR}/fsl_sub_seychelles -T 60 -m a -N bedpostx_pre -l ${subjdir}.bedpostX/logs ${FSLDIR}/bin/bedpostx_preproc.sh ${subjdir}`"
Any idea how to fix this error?
Trac-all -prep finished without error. I've Freesurfer 5.1.0, Ubuntu 11.04 and FSL 4.1.8 installed using Neurodebian and I don't use SGE.
I'd appreciate an early answer.
Thanks, Gabor _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer