Sorry, I missed that you were in the volume. Try using mri_label2vol, something like mri_label2vol --label lh.entorhinal.label --temp orig.mgz --identity --fillthresh .01 --subject subjectname --fill-ribbon --o lh.ento.mgz
On 3/20/2020 11:08 PM, Mohammad Rashid wrote:
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Hello Dr. Greve,
Thank you for the response. I have extensively searched through the options available to me in freeview, but I could not find any sort of checkbox that turns off outline mode. Here is what I see, having selected the label file: https://i.imgur.com/Rk57Qyh.png . I've gone through the menus along the top as well, but to no avail. Could you direct me to the checkbox you mentioned?
I am using freesurfer 6.0 and freeview 2.0.
Thank you, Mohammad
*From:* Mohammad Rashid 17mrr6@queensu.ca *Sent:* Thursday, March 19, 2020 1:11 PM *To:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject:* Is it possible to "fill in" the region delimited by an ROI label? Hi all,
I'm able to load in a yellow outline for the entorhinal region by loading a file named ?h.entorhinal_exvivo.label as a volume. (I first load in a brain image such as brain.mgz, and then display the outline on top of it.) Is it possible to get a solid highlight of the entorhinal region in this manner, as opposed to just an outline of the region?
(Strangely enough, if I load ?h.entorhinal_exvivo.label as a label on an surface file, such as ?h.inflated, then the entorhinal region is seen filled in with a yellow color on the 3D surface. This is the effect I want, except on a 2D volume.)
Any help is greatly appreciated, Mohammad
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