External Email - Use Caution
Once I manually fix the registration how do I save it? I know there is SAVE REG. Will this overwrite the previous file automatically?
On Tue, Nov 13, 2018 at 12:13 PM Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> wrote:
Just run recon-all -s subject -segstats and the new ICV should appear in the aseg.stats file
On 11/13/2018 12:08 PM, Gamaliz wrote:
External Email - Use CautionI have a fewT1 scans that have obvious incorrect registration to mni_average_305. I opened tkregister2 --s subjid --fstal --surfs and I am able to fix the registration, but I wonder how to use the ew registration to recalculate the new ICV. I am interested in doing it with Freesurfer (as I know I could get the matrix and calculate the determinant. I guess I will have to save the transform and rerun some of Freesurfer command to overwrite the old icv value?
Thanks
Gabriel
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer